Detailed information of SNP:
|
SNP ID:
sf0523817895(Gbrowse)
Chromosome: chr05 Position: 23817895 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.97% | 8.03% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 486 | 88.89% | 11.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 52.33% | 47.67% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523817895 | G->A | LOC_Os05g40730(LOC_Os05g40730.1) | INTRON |