Detailed information of SNP:
|
SNP ID:
sf0523918329(Gbrowse)
Chromosome: chr05 Position: 23918329 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.99% | 44.01% |
| All Indica | 791 | 94.31% | 5.69% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0523918329 | C->T | INTERGENIC | None |