Detailed information of SNP:
|
SNP ID:
sf0524044372(Gbrowse)
Chromosome: chr05 Position: 24044372 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 92.00% | 8.00% |
| All Indica | 792 | 88.01% | 11.99% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 211 | 81.99% | 18.01% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524044372 | G->A | INTERGENIC | None |