Detailed information of SNP:
|
SNP ID:
sf0524121090(Gbrowse)
Chromosome: chr05 Position: 24121090 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 798 | 37.47% | 62.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 45.07% | 54.93% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524121090 | C->T | INTERGENIC | None |