Detailed information of SNP:
|
SNP ID:
sf0524124669(Gbrowse)
Chromosome: chr05 Position: 24124669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 58.64% | 41.36% |
| All Indica | 794 | 39.04% | 60.96% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 374 | 45.99% | 54.01% |
| Indica II | 211 | 28.91% | 71.09% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524124669 | G->A | LOC_Os05g41290(LOC_Os05g41290.1) | Non-Synonymous SNP |