Detailed information of SNP:
|
SNP ID:
sf0524210375(Gbrowse)
Chromosome: chr05 Position: 24210375 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.66% | 48.34% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524210375 | T->A | LOC_Os05g41440(LOC_Os05g41440.2) | UTR_5_PRIME |
| sf0524210375 | T->A | LOC_Os05g41440(LOC_Os05g41440.1) | INTRON |