Detailed information of SNP:
|
SNP ID:
sf0524237822(Gbrowse)
Chromosome: chr05 Position: 24237822 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 77.79% | 22.21% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 441 | 34.92% | 65.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 294 | 32.99% | 67.01% |
| Tropical Japonica | 84 | 48.81% | 51.19% |
| Japonica Intermediate | 63 | 25.40% | 74.60% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524237822 | T->C | INTERGENIC | None |