Detailed information of SNP:
|
SNP ID:
sf0524256612(Gbrowse)
Chromosome: chr05 Position: 24256612 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1288 | 87.27% | 12.73% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 369 | 57.72% | 42.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 237 | 48.52% | 51.48% |
| Tropical Japonica | 80 | 95.00% | 5.00% |
| Japonica Intermediate | 52 | 42.31% | 57.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524256612 | G->A | INTERGENIC | None |