Detailed information of SNP:
|
SNP ID:
sf0524267397(Gbrowse)
Chromosome: chr05 Position: 24267397 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.00% | 43.00% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524267397 | G->T | INTERGENIC | None |