Detailed information of SNP:
|
SNP ID:
sf0524292351(Gbrowse)
Chromosome: chr05 Position: 24292351 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 51.77% | 48.23% |
| All Indica | 794 | 87.66% | 12.34% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 86.25% | 13.75% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524292351 | G->A | INTERGENIC | None |