Detailed information of SNP:
|
SNP ID:
sf0524310784(Gbrowse)
Chromosome: chr05 Position: 24310784 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.80% | 43.20% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524310784 | C->T | LOC_Os05g41610(LOC_Os05g41610.1) | INTRON |