Detailed information of SNP:
|
SNP ID:
sf0524319577(Gbrowse)
Chromosome: chr05 Position: 24319577 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.01% | 42.99% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524319577 | G->A | INTERGENIC | None |