Detailed information of SNP:
|
SNP ID:
sf0524337964(Gbrowse)
Chromosome: chr05 Position: 24337964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 79.87% | 20.13% |
| All Indica | 728 | 66.07% | 33.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 338 | 72.78% | 27.22% |
| Indica II | 205 | 58.54% | 41.46% |
| Indica Intermediate | 185 | 62.16% | 37.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524337964 | G->A | LOC_Os05g41700(LOC_Os05g41700.1) | INTRON |