Detailed information of SNP:
|
SNP ID:
sf0524343924(Gbrowse)
Chromosome: chr05 Position: 24343924 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 55.46% | 44.54% |
| All Indica | 790 | 86.20% | 13.80% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 94.58% | 5.42% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524343924 | C->T | LOC_Os05g41720(LOC_Os05g41720.1) | Synonymous |