Detailed information of SNP:
|
SNP ID:
sf0524346839(Gbrowse)
Chromosome: chr05 Position: 24346839 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 52.30% | 47.70% |
| All Indica | 795 | 88.55% | 11.45% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524346839 | C->T | LOC_Os05g41720(LOC_Os05g41720.1) | Non-Synonymous SNP |