Detailed information of SNP:
|
SNP ID:
sf0524365081(Gbrowse)
Chromosome: chr05 Position: 24365081 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.60% | 46.40% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524365081 | A->G | INTERGENIC | None |