Detailed information of SNP:
|
SNP ID:
sf0524444230(Gbrowse)
Chromosome: chr05 Position: 24444230 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.88% | 44.12% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524444230 | C->T | LOC_Os05g41850(LOC_Os05g41850.1) | INTRON |