Detailed information of SNP:
|
SNP ID:
sf0524445631(Gbrowse)
Chromosome: chr05 Position: 24445631 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 95.70% | 4.30% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 408 | 86.52% | 13.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 95.62% | 4.38% |
| Tropical Japonica | 78 | 56.41% | 43.59% |
| Japonica Intermediate | 56 | 83.93% | 16.07% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524445631 | G->A | LOC_Os05g41850(LOC_Os05g41850.1) | Synonymous |