Detailed information of SNP:
|
SNP ID:
sf0524449998(Gbrowse)
Chromosome: chr05 Position: 24449998 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.60% | 4.40% |
| All Indica | 788 | 92.13% | 7.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 85.09% | 14.91% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524449998 | T->A | LOC_Os05g41860(LOC_Os05g41860.1) | Non-Synonymous SNP |