Detailed information of SNP:



SNP ID: sf0524449998(Gbrowse)

Chromosome: chr05

Position: 24449998
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1408 95.60% 4.40%
All Indica788 92.13% 7.87%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I369 85.09% 14.91%
Indica II213 99.53% 0.47%
Indica Intermediate206 97.09% 2.91%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0524449998 T->A LOC_Os05g41860(LOC_Os05g41860.1) Non-Synonymous SNP