Detailed information of SNP:
|
SNP ID:
sf0524452238(Gbrowse)
Chromosome: chr05 Position: 24452238 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524452238 | A->G | LOC_Os05g41860(LOC_Os05g41860.1) | Non-Synonymous SNP |