Detailed information of SNP:
|
SNP ID:
sf0524525696(Gbrowse)
Chromosome: chr05 Position: 24525696 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.49% | 46.51% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524525696 | G->C | LOC_Os05g42000(LOC_Os05g42000.1) | INTRON |
| sf0524525696 | G->C | LOC_Os05g42000(LOC_Os05g42000.2) | INTRON |