Detailed information of SNP:
|
SNP ID:
sf0524548904(Gbrowse)
Chromosome: chr05 Position: 24548904 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 54.06% | 45.94% |
| All Indica | 773 | 85.51% | 14.49% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 361 | 94.18% | 5.82% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 199 | 88.94% | 11.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524548904 | G->T | INTERGENIC | None |