Detailed information of SNP:
|
SNP ID:
sf0524559093(Gbrowse)
Chromosome: chr05 Position: 24559093 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524559093 | C->T | INTERGENIC | None |