Detailed information of SNP:
|
SNP ID:
sf0524583164(Gbrowse)
Chromosome: chr05 Position: 24583164 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 96.25% | 3.75% |
| All Indica | 743 | 93.54% | 6.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 94.35% | 5.65% |
| Indica II | 197 | 91.37% | 8.63% |
| Indica Intermediate | 192 | 94.27% | 5.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524583164 | G->C | LOC_Os05g42150(LOC_Os05g42150.1) | Non-Synonymous SNP |