Detailed information of SNP:
|
SNP ID:
sf0524603967(Gbrowse)
Chromosome: chr05 Position: 24603967 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 95.94% | 4.06% |
| All Indica | 741 | 93.25% | 6.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 40 | 90.00% | 10.00% |
| Indica I | 340 | 92.35% | 7.65% |
| Indica II | 202 | 95.54% | 4.46% |
| Indica Intermediate | 199 | 92.46% | 7.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524603967 | A->G | INTERGENIC | None |