Detailed information of SNP:
|
SNP ID:
sf0524627455(Gbrowse)
Chromosome: chr05 Position: 24627455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 92.92% | 7.08% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 480 | 89.17% | 10.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 90 | 55.56% | 44.44% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524627455 | G->A | INTERGENIC | None |