Detailed information of SNP:
|
SNP ID:
sf0524657362(Gbrowse)
Chromosome: chr05 Position: 24657362 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524657362 | T->A | INTERGENIC | None |