Detailed information of SNP:
|
SNP ID:
sf0524720216(Gbrowse)
Chromosome: chr05 Position: 24720216 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524720216 | T->C | INTERGENIC | None |