Detailed information of SNP:
|
SNP ID:
sf0524724466(Gbrowse)
Chromosome: chr05 Position: 24724466 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 67.66% | 32.34% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 489 | 22.49% | 77.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 328 | 31.40% | 68.60% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524724466 | C->T | INTERGENIC | None |