Detailed information of SNP:
|
SNP ID:
sf0524730799(Gbrowse)
Chromosome: chr05 Position: 24730799 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 96.71% | 3.29% |
| All Indica | 788 | 94.92% | 5.08% |
| All Japonica | 455 | 99.12% | 0.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 202 | 82.67% | 17.33% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 305 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524730799 | C->A | LOC_Os05g42370(LOC_Os05g42370.1) | Non-Synonymous SNP |