Detailed information of SNP:
|
SNP ID:
sf0524733044(Gbrowse)
Chromosome: chr05 Position: 24733044 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1318 | 54.86% | 45.14% |
| All Indica | 741 | 90.55% | 9.45% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 33 | 93.94% | 6.06% |
| Indica I | 342 | 99.12% | 0.88% |
| Indica II | 201 | 71.14% | 28.86% |
| Indica Intermediate | 198 | 95.45% | 4.55% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 34 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524733044 | C->G | LOC_Os05g42370(LOC_Os05g42370.1) | Non-Synonymous SNP |