Detailed information of SNP:
|
SNP ID:
sf0524770336(Gbrowse)
Chromosome: chr05 Position: 24770336 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.39% | 40.61% |
| All Indica | 797 | 92.10% | 7.90% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524770336 | T->C | INTERGENIC | None |