Detailed information of SNP:
|
SNP ID:
sf0524778418(Gbrowse)
Chromosome: chr05 Position: 24778418 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1225 | 58.69% | 41.31% |
| All Indica | 614 | 21.17% | 78.83% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 275 | 9.45% | 90.55% |
| Indica II | 175 | 41.71% | 58.29% |
| Indica Intermediate | 164 | 18.90% | 81.10% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524778418 | G->A | LOC_Os05g42410(LOC_Os05g42410.1) | Non-Synonymous SNP |