Detailed information of SNP:



SNP ID: sf0524909866(Gbrowse)

Chromosome: chr05

Position: 24909866
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 54.97% 45.03%
All Indica799 94.24% 5.76%
All Japonica497 1.81% 98.19%
Aus67 1.49% 98.51%
Indica I375 99.73% 0.27%
Indica II213 81.22% 18.78%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 38.10% 61.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0524909866 C->T INTERGENIC None