Detailed information of SNP:
SNP ID:
sf0524909866(Gbrowse)
Chromosome: chr05 Position: 24909866 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 54.97% | 45.03% |
All Indica | 799 | 94.24% | 5.76% |
All Japonica | 497 | 1.81% | 98.19% |
Aus | 67 | 1.49% | 98.51% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 81.22% | 18.78% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 5.32% | 94.68% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0524909866 | C->T | INTERGENIC | None |