Detailed information of SNP:
|
SNP ID:
sf0524910719(Gbrowse)
Chromosome: chr05 Position: 24910719 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 51.73% | 48.27% |
| All Indica | 795 | 89.31% | 10.69% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524910719 | G->A | LOC_Os05g42990(LOC_Os05g42990.1) | INTRON |