Detailed information of SNP:
|
SNP ID:
sf0524921399(Gbrowse)
Chromosome: chr05 Position: 24921399 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.18% | 43.82% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524921399 | C->T | LOC_Os05g43020(LOC_Os05g43020.1) | Synonymous |