Detailed information of SNP:
|
SNP ID:
sf0524974117(Gbrowse)
Chromosome: chr05 Position: 24974117 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 98.37% | 1.63% |
| All Indica | 788 | 97.34% | 2.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0524974117 | C->A | LOC_Os05g43120(LOC_Os05g43120.1) | INTRON |