Detailed information of SNP:
|
SNP ID:
sf0525023553(Gbrowse)
Chromosome: chr05 Position: 25023553 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 91.80% | 8.20% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 494 | 84.82% | 15.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525023553 | G->C | INTERGENIC | None |