Detailed information of SNP:
|
SNP ID:
sf0525032171(Gbrowse)
Chromosome: chr05 Position: 25032171 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.67% | 46.33% |
| All Indica | 797 | 92.35% | 7.65% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525032171 | G->A | INTERGENIC | None |