Detailed information of SNP:
|
SNP ID:
sf0525073997(Gbrowse)
Chromosome: chr05 Position: 25073997 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 55.79% | 44.21% |
| All Indica | 779 | 88.96% | 11.04% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 363 | 94.21% | 5.79% |
| Indica II | 207 | 74.88% | 25.12% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525073997 | G->A | LOC_Os05g43220(LOC_Os05g43220.1) | Synonymous |