Detailed information of SNP:
|
SNP ID:
sf0525079652(Gbrowse)
Chromosome: chr05 Position: 25079652 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 51.98% | 48.02% |
| All Indica | 794 | 90.43% | 9.57% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525079652 | C->T | INTERGENIC | None |