Detailed information of SNP:
|
SNP ID:
sf0525132951(Gbrowse)
Chromosome: chr05 Position: 25132951 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 89.86% | 10.14% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 470 | 70.64% | 29.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 59.37% | 40.63% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525132951 | A->G | LOC_Os05g43310(LOC_Os05g43310.2) | INTRON |