Detailed information of SNP:
|
SNP ID:
sf0525147979(Gbrowse)
Chromosome: chr05 Position: 25147979 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 95.68% | 4.32% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 17.74% | 82.26% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525147979 | G->A | LOC_Os05g43350(LOC_Os05g43350.1) | Synonymous |