Detailed information of SNP:
|
SNP ID:
sf0525177296(Gbrowse)
Chromosome: chr05 Position: 25177296 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1144 | 91.26% | 8.74% |
| All Indica | 530 | 81.32% | 18.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 237 | 75.95% | 24.05% |
| Indica II | 159 | 89.94% | 10.06% |
| Indica Intermediate | 134 | 80.60% | 19.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525177296 | C->T | LOC_Os05g43410(LOC_Os05g43410.1) | Non-Synonymous SNP |