Detailed information of SNP:
|
SNP ID:
sf0525181244(Gbrowse)
Chromosome: chr05 Position: 25181244 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 98.21% | 1.79% |
| All Indica | 781 | 96.93% | 3.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525181244 | A->G | LOC_Os05g43410(LOC_Os05g43410.1) | Synonymous |