Detailed information of SNP:
|
SNP ID:
sf0525187452(Gbrowse)
Chromosome: chr05 Position: 25187452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 50.65% | 49.35% |
| All Indica | 759 | 21.34% | 78.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 356 | 17.13% | 82.87% |
| Indica II | 205 | 33.17% | 66.83% |
| Indica Intermediate | 198 | 16.67% | 83.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525187452 | C->T | INTERGENIC | None |