Detailed information of SNP:
|
SNP ID:
sf0525340482(Gbrowse)
Chromosome: chr05 Position: 25340482 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1166 | 51.29% | 48.71% |
| All Indica | 550 | 92.18% | 7.82% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 231 | 99.13% | 0.87% |
| Indica II | 182 | 80.22% | 19.78% |
| Indica Intermediate | 137 | 96.35% | 3.65% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525340482 | G->A | LOC_Os05g43700(LOC_Os05g43700.1) | INTRON |