Detailed information of SNP:
|
SNP ID:
sf0525353647(Gbrowse)
Chromosome: chr05 Position: 25353647 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.77% | 9.23% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 77.31% | 22.69% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525353647 | G->T | INTERGENIC | None |