Detailed information of SNP:
|
SNP ID:
sf0525433350(Gbrowse)
Chromosome: chr05 Position: 25433350 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525433350 | G->A | INTERGENIC | None |