Detailed information of SNP:
|
SNP ID:
sf0525458278(Gbrowse)
Chromosome: chr05 Position: 25458278 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1200 | 95.33% | 4.67% |
| All Indica | 584 | 90.41% | 9.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 259 | 81.08% | 18.92% |
| Indica II | 159 | 98.74% | 1.26% |
| Indica Intermediate | 166 | 96.99% | 3.01% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0525458278 | C->T | INTERGENIC | None |